PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g008960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 194aa    MW: 22564 Da    PI: 10.2518
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g008960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-055779123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC++C ++F+++  L  H++ H
  Csa20g008960.1 57 FKCHYCFRHFPTSQALGGHQNAH 79
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-55484No hitNo description
PROSITE profilePS5015710.8035784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKTHDFMNVN SFTPKERPIR LFGFEFGASH EESESSKDNN EKSTESIKGN NKEKRRFKCH  60
YCFRHFPTSQ ALGGHQNAHK RERQQIKRFN LHSNAAALFH RHQDHVAASR FFEDRFGVEA  120
SQINDASGLG FWRRYNSSAR FNRDGPSYNR YMPLFIGDNQ TRPPTYVDGS SRRSLFYESK  180
TNVPDHVSLD LRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491242.11e-144PREDICTED: zinc finger protein GIS2-like
SwissprotQ9FG051e-101GIS2_ARATH; Zinc finger protein GIS2
TrEMBLR0HDE31e-100R0HDE3_9BRAS; Uncharacterized protein
STRINGAT5G06650.13e-99(Arabidopsis thaliana)
STRINGfgenesh2_kg.6__609__AT5G06650.13e-99(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146591214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.16e-94C2H2 family protein